LightAttentionSubcellularLocalization
Sequence-level prediction of protein subcellular localization classes.
Summary
- Model name:
LightAttentionSubcellularLocalization - Task: Protein subcellular localization prediction
- Protocol:
residues_to_class - Embedder:
Rostlab/prot_t5_xl_uniref50 - Model size:
75.8 MB
Outputs
subcellular_localization
- Description: Protein subcellular localization
- Output type:
per_sequence - Value type:
str
| Class | Meaning |
|---|---|
Cell_membrane | Protein is localized to the cell membrane |
Cytoplasm | Protein is localized to the cytoplasm |
Endoplasmatic_reticulum | Protein is localized to the endoplasmic reticulum |
Golgi_apparatus | Protein is localized to the Golgi apparatus |
Lysosome_or_Vacuole | Protein is localized to lysosomes or vacuoles |
Mitochondrion | Protein is localized to mitochondria |
Nucleus | Protein is localized to the nucleus |
Peroxisome | Protein is localized to peroxisomes |
Plastid | Protein is localized to plastids |
Extracellular | Protein is secreted outside the cell |
References
- Authors: Stärk, Hannes; Dallago, Christian; Heinzinger, Michael; Rost, Burkhard
- Model link: github.com/HannesStark/protein-localization
- Citation: doi.org/10.1093/bioadv/vbab035
- License:
MIT - Training data: data.bioembeddings.com/public/design