ProtT5SecondaryStructure
Per-residue secondary-structure prediction in 3-state and DSSP 8-state formats.
- Model name:
ProtT5SecondaryStructure
- Task: Protein secondary-structure prediction
- Protocol:
residue_to_class
- Embedder:
Rostlab/prot_t5_xl_uniref50
- Model size:
929.0 KB
- Description: 3-state secondary structure prediction
- Output type:
per_residue
- Value type:
str
| Class | Meaning |
|---|
H | Residue is part of an alpha helix |
E | Residue is part of a beta sheet |
L | Residue is part of a loop or coil |
- Description: 8-state DSSP secondary structure prediction
- Output type:
per_residue
- Value type:
str
| Class | Meaning |
|---|
G | 3-10 helix |
H | Alpha helix |
I | Pi helix |
B | Beta bridge |
E | Extended strand |
S | Bend |
T | Turn |
C | Coil |
- Authors: Elnaggar, Ahmed; Heinzinger, Michael; Dallago, Christian; Rehawi, Ghalia; Yu, Wang; Jones, Llion; Gibbs, Tom; Feher, Tamas; Angerer, Christoph; Steinegger, Martin; Bhowmik, Debsindhu; Rost, Burkhard
- Model link: github.com/agemagician/ProtTrans
- Citation: doi.org/10.1109/TPAMI.2021.3095381
- License:
MIT
- Training data: data.bioembeddings.com/public/design