ProtT5Conservation
Per-residue evolutionary conservation state prediction.
Summary
- Model name:
ProtT5Conservation - Task: Protein residue conservation prediction (VESPA)
- Protocol:
residue_to_class - Embedder:
Rostlab/prot_t5_xl_uniref50 - Model size:
926.7 KB
Outputs
conservation
- Description: Per-residue evolutionary conservation prediction
- Output type:
per_residue - Value type:
str
| Class range | Label | Meaning |
|---|---|---|
0 to 3 | Variable | Residue is evolutionarily variable |
4 to 6 | Average | Residue is equally conserved and variable |
7 to 8 | Conserved | Residue is evolutionarily conserved |
References
- Authors: Céline Marquet; Michael Heinzinger; Tobias Olenyi; Christian Dallago; Kyra Erckert; Michael Bernhofer; Dmitrii Nechaev; Burkhard Rost
- Model link: github.com/Rostlab/VESPA
- Citation: doi.org/10.1007/s00439-021-02411-y
- License:
AGPL-3.0 - Training data: data.bioembeddings.com/public/design